Detailed information of SNP:



SNP ID: sf0113474747(Gbrowse)

Chromosome: chr01

Position: 13474747
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 98.66% 1.34%
All Indica799 99.75% 0.25%
All Japonica497 97.18% 2.82%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 86.17% 13.83%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0113474747 C->T INTERGENIC None