Detailed information of SNP:
|
SNP ID:
sf0217790232(Gbrowse)
Chromosome: chr02 Position: 17790232 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 91.73% | 8.27% |
| All Indica | 783 | 85.82% | 14.18% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 83.52% | 16.48% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217790232 | T->C | LOC_Os02g29930(LOC_Os02g29930.1) | Synonymous |