Detailed information of SNP:
|
SNP ID:
sf0315930437(Gbrowse)
Chromosome: chr03 Position: 15930437 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.03% | 39.97% |
| All Indica | 797 | 87.33% | 12.67% |
| All Japonica | 496 | 12.70% | 87.30% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 87.13% | 12.87% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315930437 | T->C | INTERGENIC | None |