Detailed information of SNP:
|
SNP ID:
sf0431709821(Gbrowse)
Chromosome: chr04 Position: 31709821 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.35% | 49.65% |
| All Indica | 797 | 45.42% | 54.58% |
| All Japonica | 495 | 62.83% | 37.17% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 54.67% | 45.33% |
| Indica II | 211 | 40.28% | 59.72% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 93 | 22.58% | 77.42% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431709821 | G->A | INTERGENIC | None |