Detailed information of SNP:
|
SNP ID:
sf0727957027(Gbrowse)
Chromosome: chr07 Position: 27957027 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.12% | 31.88% |
| All Indica | 798 | 48.12% | 51.88% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 56.68% | 43.32% |
| Indica II | 213 | 30.05% | 69.95% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727957027 | C->T | INTERGENIC | None |