Haplotype Network Analysis:

Plot haplotype network using SNP IDs:

Please Input SNP ID:

Please input SNP IDs (the number of SNPs < 100) for this analysis (e.g., SNPs in Sa-F gene: sf0122374902,sf0122375383,sf0122375389,sf0122375600,sf0122376228,sf0122376317,sf0122376334,sf0122376442). You can choose different group set to do this analysis.

Classification 1: Indica, Japonica and Intermediate (Indica group includes Indica I, Indical II, Indica Intermediate and Aus. Japonica group includes Temperate Japonica, Tropical Japonica and Japonic Intermediate. Intermediate group includes Aromatic and other accessions).
Classification 2: Indica, Japonica, Aus and Intermediate (Indica group includes Indica I, Indical II and Indica Intermediate. Japonica group includes Temperate Japonica, Tropical Japonica and Japonic Intermediate. Intermediate group includes Aromatic and other accessions).
Classification 3: Indica I, Indical II, Indica Intermediate,Aus, Temperate Japonica, Tropical Japonica, Japonica Intermediate and Intermediate (Intermediate group includes Aromatic and other accessions)

The detailed information of the classification can be found in the "Notes and Data Evaluation" page.