Detailed information of SNP:
|
SNP ID:
sf0100035866(Gbrowse)
Chromosome: chr01 Position: 35866 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1206 | 97.35% | 2.65% |
| All Indica | 707 | 99.86% | 0.14% |
| All Japonica | 380 | 91.84% | 8.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 100.00% | 0.00% |
| Indica II | 162 | 100.00% | 0.00% |
| Indica Intermediate | 192 | 99.48% | 0.52% |
| Temperate Japonica | 251 | 88.84% | 11.16% |
| Tropical Japonica | 73 | 97.26% | 2.74% |
| Japonica Intermediate | 56 | 98.21% | 1.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100035866 | G->C | LOC_Os01g01080(LOC_Os01g01080.1) | Non-Synonymous SNP |
| sf0100035866 | G->C | LOC_Os01g01080(LOC_Os01g01080.3) | UTR_5_PRIME |
| sf0100035866 | G->C | LOC_Os01g01080(LOC_Os01g01080.2) | UTR_5_PRIME |