Detailed information of SNP:
|
SNP ID:
sf0100042649(Gbrowse)
Chromosome: chr01 Position: 42649 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 67.21% | 32.79% |
| All Indica | 795 | 52.96% | 47.04% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 373 | 26.01% | 73.99% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 209 | 61.24% | 38.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100042649 | T->C | INTERGENIC | None |