Detailed information of SNP:
|
SNP ID:
sf0100043434(Gbrowse)
Chromosome: chr01 Position: 43434 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 84.74% | 15.26% |
| All Indica | 745 | 74.36% | 25.64% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 335 | 56.72% | 43.28% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 200 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100043434 | C->T | INTERGENIC | None |