Detailed information of SNP:
|
SNP ID:
sf0100067121(Gbrowse)
Chromosome: chr01 Position: 67121 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 72.43% | 27.57% |
| All Indica | 793 | 61.16% | 38.84% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 370 | 35.95% | 64.05% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100067121 | G->A | INTERGENIC | None |