Detailed information of SNP:
|
SNP ID:
sf0100095616(Gbrowse)
Chromosome: chr01 Position: 95616 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.80% | 34.20% |
| All Indica | 799 | 51.44% | 48.56% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 24.00% | 76.00% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100095616 | C->T | LOC_Os01g01200(LOC_Os01g01200.1) | Non-Synonymous SNP |