Detailed information of SNP:
|
SNP ID:
sf0100099017(Gbrowse)
Chromosome: chr01 Position: 99017 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 66.29% | 33.71% |
| All Indica | 798 | 52.01% | 47.99% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 24.00% | 76.00% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100099017 | T->C | LOC_Os01g01210(LOC_Os01g01210.1) | INTRON |