Detailed information of SNP:
|
SNP ID:
sf0100182346(Gbrowse)
Chromosome: chr01 Position: 182346 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 68.27% | 31.73% |
| All Indica | 798 | 54.89% | 45.11% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 374 | 28.34% | 71.66% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100182346 | A->G | INTERGENIC | None |