Detailed information of SNP:
|
SNP ID:
sf0100187252(Gbrowse)
Chromosome: chr01 Position: 187252 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 72.90% | 27.10% |
| All Indica | 798 | 54.51% | 45.49% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 26.20% | 73.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100187252 | C->T | LOC_Os01g01369(LOC_Os01g01369.1) | INTRON |