Detailed information of SNP:
|
SNP ID:
sf0100238153(Gbrowse)
Chromosome: chr01 Position: 238153 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 97.78% | 2.22% |
| All Indica | 779 | 96.53% | 3.47% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 197 | 94.92% | 5.08% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100238153 | G->A | INTERGENIC | None |