Detailed information of SNP:
|
SNP ID:
sf0100299455(Gbrowse)
Chromosome: chr01 Position: 299455 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 53.63% | 46.37% |
| All Indica | 797 | 23.34% | 76.66% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 5.61% | 94.39% |
| Indica II | 212 | 45.28% | 54.72% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100299455 | C->T | INTERGENIC | None |