Detailed information of SNP:
|
SNP ID:
sf0100374558(Gbrowse)
Chromosome: chr01 Position: 374558 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 95.35% | 4.65% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100374558 | A->C | LOC_Os01g01710(LOC_Os01g01710.1) | INTRON |