Detailed information of SNP:
|
SNP ID:
sf0100396304(Gbrowse)
Chromosome: chr01 Position: 396304 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 90.44% | 9.56% |
| All Indica | 796 | 86.56% | 13.44% |
| All Japonica | 495 | 96.97% | 3.03% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 81.02% | 18.98% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100396304 | T->C | INTERGENIC | None |