Detailed information of SNP:
|
SNP ID:
sf0100400934(Gbrowse)
Chromosome: chr01 Position: 400934 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 56.66% | 43.34% |
| All Indica | 796 | 83.42% | 16.58% |
| All Japonica | 494 | 9.92% | 90.08% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 332 | 10.84% | 89.16% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100400934 | A->G | INTERGENIC | None |