Detailed information of SNP:
|
SNP ID:
sf0100430870(Gbrowse)
Chromosome: chr01 Position: 430870 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 60.07% | 39.93% |
| All Indica | 791 | 41.72% | 58.28% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 368 | 25.27% | 74.73% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 211 | 52.61% | 47.39% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100430870 | A->G | INTERGENIC | None |