Detailed information of SNP:



SNP ID: sf0100435915(Gbrowse)

Chromosome: chr01

Position: 435915
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 95.49% 4.51%
All Indica799 99.87% 0.13%
All Japonica497 100.00% 0.00%
Aus67 29.85% 70.15%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0100435915 C->T INTERGENIC None