Detailed information of SNP:
|
SNP ID:
sf0100447187(Gbrowse)
Chromosome: chr01 Position: 447187 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.95% | 49.05% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 10.15% | 89.85% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100447187 | T->A | LOC_Os01g01830(LOC_Os01g01830.1) | INTRON |