Detailed information of SNP:
|
SNP ID:
sf0100448701(Gbrowse)
Chromosome: chr01 Position: 448701 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 71.11% | 28.89% |
| All Indica | 799 | 69.59% | 30.41% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100448701 | G->A | INTERGENIC | None |