Detailed information of SNP:



SNP ID: sf0100448701(Gbrowse)

Chromosome: chr01

Position: 448701
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 71.11% 28.89%
All Indica799 69.59% 30.41%
All Japonica497 83.90% 16.10%
Aus67 8.96% 91.04%
Indica I375 67.73% 32.27%
Indica II213 82.63% 17.37%
Indica Intermediate211 59.72% 40.28%
Temperate Japonica335 87.76% 12.24%
Tropical Japonica94 67.02% 32.98%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0100448701 G->A INTERGENIC None