Detailed information of SNP:
|
SNP ID:
sf0100478137(Gbrowse)
Chromosome: chr01 Position: 478137 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.83% | 48.17% |
| All Indica | 798 | 30.33% | 69.67% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 1.87% | 98.13% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 210 | 29.52% | 70.48% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100478137 | C->T | LOC_Os01g01870(LOC_Os01g01870.1) | INTRON |