Detailed information of SNP:
|
SNP ID:
sf0100484623(Gbrowse)
Chromosome: chr01 Position: 484623 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.41% | 45.59% |
| All Indica | 798 | 30.83% | 69.17% |
| All Japonica | 496 | 92.34% | 7.66% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 2.13% | 97.87% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100484623 | A->C | LOC_Os01g01890(LOC_Os01g01890.1) | Synonymous |