Detailed information of SNP:
|
SNP ID:
sf0100489718(Gbrowse)
Chromosome: chr01 Position: 489718 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 64.78% | 35.22% |
| All Indica | 794 | 44.46% | 55.54% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 372 | 21.51% | 78.49% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 210 | 46.67% | 53.33% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100489718 | G->A | LOC_Os01g01900(LOC_Os01g01900.1) | INTRON |