Detailed information of SNP:
|
SNP ID:
sf0100542265(Gbrowse)
Chromosome: chr01 Position: 542265 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 96.83% | 3.17% |
| All Indica | 790 | 99.87% | 0.13% |
| All Japonica | 479 | 91.44% | 8.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 99.69% | 0.31% |
| Tropical Japonica | 89 | 59.55% | 40.45% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100542265 | A->G | LOC_Os01g02000(LOC_Os01g02000.1) | UTR_3_PRIME |
| sf0100542265 | A->G | LOC_Os01g02010(LOC_Os01g02010.1) | UTR_3_PRIME |