Detailed information of SNP:
|
SNP ID:
sf0100546738(Gbrowse)
Chromosome: chr01 Position: 546738 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 89.50% | 10.50% |
| All Indica | 786 | 82.95% | 17.05% |
| All Japonica | 491 | 99.39% | 0.61% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 202 | 45.05% | 54.95% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100546738 | G->A | INTERGENIC | None |