Detailed information of SNP:
|
SNP ID:
sf0100616428(Gbrowse)
Chromosome: chr01 Position: 616428 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 55.63% | 44.37% |
| All Indica | 793 | 33.67% | 66.33% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 370 | 10.54% | 89.46% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 210 | 32.86% | 67.14% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100616428 | A->G | INTERGENIC | None |