Detailed information of SNP:
|
SNP ID:
sf0100618688(Gbrowse)
Chromosome: chr01 Position: 618688 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 55.12% | 44.88% |
| All Indica | 787 | 27.32% | 72.68% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 11.50% | 88.50% |
| Indica II | 205 | 54.63% | 45.37% |
| Indica Intermediate | 208 | 28.85% | 71.15% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100618688 | G->A | INTERGENIC | None |