Detailed information of SNP:
|
SNP ID:
sf0100638439(Gbrowse)
Chromosome: chr01 Position: 638439 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 71.51% | 28.49% |
| All Indica | 770 | 59.74% | 40.26% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 33.33% | 66.67% |
| Indica II | 188 | 95.74% | 4.26% |
| Indica Intermediate | 207 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100638439 | G->A | INTERGENIC | None |