Detailed information of SNP:
|
SNP ID:
sf0100673416(Gbrowse)
Chromosome: chr01 Position: 673416 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.83% | 42.17% |
| All Indica | 798 | 37.59% | 62.41% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 13.60% | 86.40% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 34.29% | 65.71% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100673416 | T->C | INTERGENIC | None |