Detailed information of SNP:
|
SNP ID:
sf0100675332(Gbrowse)
Chromosome: chr01 Position: 675332 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 51.77% | 48.23% |
| All Indica | 794 | 75.19% | 24.81% |
| All Japonica | 497 | 19.52% | 80.48% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 209 | 26.32% | 73.68% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100675332 | A->G | INTERGENIC | None |