Detailed information of SNP:
|
SNP ID:
sf0100693746(Gbrowse)
Chromosome: chr01 Position: 693746 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.55% | 42.45% |
| All Indica | 798 | 60.90% | 39.10% |
| All Japonica | 497 | 44.87% | 55.13% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 66.84% | 33.16% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 26.27% | 73.73% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100693746 | A->G | LOC_Os01g02260(LOC_Os01g02260.1) | Synonymous |