Detailed information of SNP:
|
SNP ID:
sf0100694189(Gbrowse)
Chromosome: chr01 Position: 694189 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 89.36% | 10.64% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 480 | 79.79% | 20.21% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 324 | 83.02% | 16.98% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 63 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100694189 | G->T | LOC_Os01g02260(LOC_Os01g02260.1) | Non-Synonymous SNP |