Detailed information of SNP:
|
SNP ID:
sf0100694213(Gbrowse)
Chromosome: chr01 Position: 694213 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 89.12% | 10.88% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 481 | 78.79% | 21.21% |
| Aus | 62 | 58.06% | 41.94% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 324 | 82.72% | 17.28% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100694213 | G->C | LOC_Os01g02260(LOC_Os01g02260.1) | Non-Synonymous SNP |