Detailed information of SNP:
|
SNP ID:
sf0100715547(Gbrowse)
Chromosome: chr01 Position: 715547 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 84.73% | 15.27% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 495 | 70.51% | 29.49% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 334 | 74.85% | 25.15% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100715547 | C->T | INTERGENIC | None |