Detailed information of SNP:
|
SNP ID:
sf0100778931(Gbrowse)
Chromosome: chr01 Position: 778931 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 83.50% | 16.50% |
| All Indica | 780 | 72.18% | 27.82% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 197 | 79.19% | 20.81% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100778931 | T->C | INTERGENIC | None |