Detailed information of SNP:
|
SNP ID:
sf0100779655(Gbrowse)
Chromosome: chr01 Position: 779655 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 64.26% | 35.74% |
| All Indica | 738 | 73.71% | 26.29% |
| All Japonica | 497 | 43.66% | 56.34% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 179 | 23.46% | 76.54% |
| Indica Intermediate | 187 | 70.59% | 29.41% |
| Temperate Japonica | 335 | 27.46% | 72.54% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100779655 | G->T | INTERGENIC | None |