Detailed information of SNP:
|
SNP ID:
sf0100782830(Gbrowse)
Chromosome: chr01 Position: 782830 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1333 | 91.82% | 8.18% |
| All Indica | 718 | 91.50% | 8.50% |
| All Japonica | 493 | 98.78% | 1.22% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 331 | 90.94% | 9.06% |
| Indica II | 203 | 95.57% | 4.43% |
| Indica Intermediate | 184 | 88.04% | 11.96% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100782830 | A->C | LOC_Os01g02420(LOC_Os01g02420.1) | Synonymous |