Detailed information of SNP:
|
SNP ID:
sf0100791291(Gbrowse)
Chromosome: chr01 Position: 791291 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 61.85% | 38.15% |
| All Indica | 798 | 58.15% | 41.85% |
| All Japonica | 493 | 65.92% | 34.08% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 33.07% | 66.93% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 332 | 84.04% | 15.96% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100791291 | G->A | LOC_Os01g02440(LOC_Os01g02440.1) | Synonymous |