Detailed information of SNP:
|
SNP ID:
sf0100853927(Gbrowse)
Chromosome: chr01 Position: 853927 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 78.98% | 21.02% |
| All Indica | 798 | 65.66% | 34.34% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 66.84% | 33.16% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100853927 | G->C | INTERGENIC | None |