Detailed information of SNP:
|
SNP ID:
sf0100915093(Gbrowse)
Chromosome: chr01 Position: 915093 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 67.97% | 32.03% |
| All Indica | 789 | 50.95% | 49.05% |
| All Japonica | 495 | 92.53% | 7.47% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 368 | 68.48% | 31.52% |
| Indica II | 213 | 15.02% | 84.98% |
| Indica Intermediate | 208 | 56.73% | 43.27% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100915093 | A->G | LOC_Os01g02690(LOC_Os01g02690.1) | Non-Synonymous SNP |