Detailed information of SNP:
|
SNP ID:
sf0100928671(Gbrowse)
Chromosome: chr01 Position: 928671 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 73.64% | 26.36% |
| All Indica | 793 | 77.18% | 22.82% |
| All Japonica | 497 | 67.81% | 32.19% |
| Aus | 48 | 83.33% | 16.67% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 36.97% | 63.03% |
| Indica Intermediate | 207 | 79.71% | 20.29% |
| Temperate Japonica | 335 | 70.45% | 29.55% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100928671 | A->G | INTERGENIC | None |