Detailed information of SNP:
|
SNP ID:
sf0100934871(Gbrowse)
Chromosome: chr01 Position: 934871 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.26% | 47.74% |
| All Indica | 798 | 60.40% | 39.60% |
| All Japonica | 497 | 44.06% | 55.94% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 210 | 43.81% | 56.19% |
| Temperate Japonica | 335 | 27.76% | 72.24% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100934871 | T->C | LOC_Os01g02730(LOC_Os01g02730.1) | Synonymous |