Detailed information of SNP:
|
SNP ID:
sf0100935862(Gbrowse)
Chromosome: chr01 Position: 935862 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.84% | 46.16% |
| All Indica | 799 | 61.20% | 38.80% |
| All Japonica | 497 | 47.28% | 52.72% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 68.00% | 32.00% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 30.45% | 69.55% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100935862 | G->A | LOC_Os01g02730(LOC_Os01g02730.1) | INTRON |