Detailed information of SNP:
|
SNP ID:
sf0100945410(Gbrowse)
Chromosome: chr01 Position: 945410 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1342 | 91.36% | 8.64% |
| All Indica | 725 | 85.93% | 14.07% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 350 | 89.43% | 10.57% |
| Indica II | 187 | 80.75% | 19.25% |
| Indica Intermediate | 188 | 84.57% | 15.43% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100945410 | A->G | LOC_Os01g02740(LOC_Os01g02740.1) | INTRON |