Detailed information of SNP:
|
SNP ID:
sf0100956946(Gbrowse)
Chromosome: chr01 Position: 956946 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 95.16% | 4.84% |
| All Indica | 706 | 93.34% | 6.66% |
| All Japonica | 461 | 97.40% | 2.60% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 298 | 88.59% | 11.41% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 196 | 94.90% | 5.10% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 65 | 84.62% | 15.38% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100956946 | G->A | LOC_Os01g02760(LOC_Os01g02760.1) | Synonymous |