Detailed information of SNP:
|
SNP ID:
sf0100965110(Gbrowse)
Chromosome: chr01 Position: 965110 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 96.39% | 3.61% |
| All Indica | 780 | 100.00% | 0.00% |
| All Japonica | 429 | 89.28% | 10.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 194 | 100.00% | 0.00% |
| Temperate Japonica | 276 | 93.48% | 6.52% |
| Tropical Japonica | 90 | 95.56% | 4.44% |
| Japonica Intermediate | 63 | 61.90% | 38.10% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100965110 | C->T | INTERGENIC | None |