Detailed information of SNP:
|
SNP ID:
sf0100965475(Gbrowse)
Chromosome: chr01 Position: 965475 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 50.57% | 49.43% |
| All Indica | 790 | 28.48% | 71.52% |
| All Japonica | 494 | 81.98% | 18.02% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 370 | 22.97% | 77.03% |
| Indica II | 211 | 23.22% | 76.78% |
| Indica Intermediate | 209 | 43.54% | 56.46% |
| Temperate Japonica | 334 | 93.41% | 6.59% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0100965475 | G->A | INTERGENIC | None |